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Pedro R. A. S. Bassi,
M.Sc.

 

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Currently, a visiting Ph.D. student at the Johns Hopkins University CCVL lab (Department of Computer Science), supervised by Prof. Alan Yuille and Dr. Zongwei Zhou. Also, a Data Science and Computation Ph.D. student at the University of Bologna, Italy, supervised by Prof. Andrea Cavalli and affiliated to IIT (Italian Institute of Technology). In 2019, graduated from the State University of Campinas (UNICAMP), Brazil, with a bachelor's degree in Electrical Engineering and a Certificate of Studies in Computer Engineering. In 2021, earned a master's degree in Computer Engineering from UNICAMP. Has been conducting scientific research in the fields of machine learning and deep learning since 2017, encompassing applications in biomedical data analysis (e.g., X-ray, CT and electroencephalography), computer vision, signal processing and AI-assisted diagnosis. Main interests include improving deep learning trustworthiness, out-of-distribution generalization and explainability.

Research Interests

  • Deep learning

  • Interpretability, distributional robustness, and trustworthiness of deep neural networks

  • Application of artificial intelligence to biomedical data

  • AI-assisted diagnosis

  • Computer vision

  • Signal processing

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interests

Publications

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Journal Papers:​

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  • Li, W., Qu, C., Chen, X., Bassi, P. R. A. S., Shi, Y., Lai, Y., ... Yuille, A., & Zhou, Z. (2024). AbdomenAtlas: A large-scale, detailed-annotated, & multi-center dataset for efficient transfer learning and open algorithmic benchmarking. Medical Image Analysis, 97, 103285. DOI: https://doi.org/10.1016/j.media.2024.103285

    • Citations: 1

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  • Bassi, P. R. A. S., & Attux, R. (2022). Covid-19 detection using chest X-rays: is lung segmentation important for generalization?. Research on Biomedical Engineering, Springer. DOI: 10.1007/s42600-022-00242-y

    • Citations: 16

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  • Bassi, P. R. A. S., & Attux, R. (2022). FBDNN: Filter Banks and Deep Neural Networks for Portable and Fast Brain-Computer Interfaces. Biomedical Physics & Engineering Express, IOP. DOI: 10.1088/2057-1976/ac6300

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  • Bassi, P. R. A. S., & Attux, R. (2021). A Deep Convolutional Neural Network for COVID-19 Detection Using Chest X-Rays. Research on Biomedical Engineering, Springer. DOI: 10.1007/s42600-021-00132-9

    • Citations: 184

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  • Bassi, P. R. A. S., Rampazzo, W., & Attux, R. (2021). Transfer Learning and SpecAugment applied to SSVEP Based BCI Classification. Biomedical Signal Processing and Control, Elsevier. DOI: 10.1016/j.bspc.2021.102542

    • Citations: 32

 

Conference Papers:

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  • Bassi, P. R. A. S., Li, W., Tang, Y., Isensee, F., ... Yuille, A., & Zhou, Z. (2024). Touchstone Benchmark: Are We on the Right Way for Evaluating AI Algorithms for Medical Segmentation? NeurIPS. https://nips.cc/virtual/2024/poster/97634

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  • Bassi, P. R. A. S., & Attux, R. (2019). Deep Neural Networks: Implementation in the Context of Pattern Recognition. Revista dos Trabalhos de Iniciação Científica da UNICAMP. DOI: 10.20396/revpibic2720192824

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  • Bassi, P. R. A. S.Rampazzo, W., & Attux, R. (2019). Deep triplet neural networks applied to signal classification in brain-computer interfaces. Anais de XXXVII Simpósio Brasileiro de Telecomunicações e Processamento de Sinais (SBrT). DOI: 10.14209/sbrt.2019.1570559203

    • Citations: 2

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  • Bassi, P. R. A. S., & Attux, R. (2019). Deep Neural Network Fundamentals. Revista dos Trabalhos de Iniciação Científica da UNICAMP. DOI:  10.20396/revpibic2620181149

    • Citations: 1​​

 

Thesis:

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  • Bassi, P. R. A. S. (2021). A study of deep neural networks for image recognition in BCIs and COVID-19 detection. M.Sc. thesis. acervus.unicamp.br

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Education

Johns Hopkins University - Baltimore, MD, USA

  • 08/2024-02/2025 (expected): Visiting Ph.D. Student at the CCVL (Computational Cognition, Vision, and Learning) research lab 

    • Doctoral advisors: Professor Alan Yuille and Dr. Zongwei Zhou

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University of Bologna - Bologna, BO, Italy

  • 11/2021-11/2025 (expected): Ph.D. in Data Science and Computation 

    • Doctoral advisors: Professor Andrea Cavalli and Professor Massimo De Vittorio

    • Affiliated with IIT (Italian Institute of Technology)

 

Campinas State University (UNICAMP) - Campinas, SP, Brazil

  • 08/2019-08/2021: Masters in Computer Engineering

    • Thesis: A study of deep neural networks for image recognition in BCIs and COVID-19 detection

    • Advisor: Professor Romis Attux

    • Final GPA: 4.0/4.0

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Campinas State University (UNICAMP) - Campinas, SP, Brazil

  • 02/2014-07/2019: B.S. in Electrical Engineering

    • Certificate of Study: ​Fundamentals of computer engineering. Workload: 270 hours

    • Certificate of Study: ​Electronics, microelectronics and optoelectronics. Workload: 270 hours

    • Thesis: A study of electrical mobility in strained silicon transistors with the software Synopsis

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Publications

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Research 
Experience

Johns Hopkins University - Baltimore, MD, USA

  • 08/2024-02/2025 (expected): Visiting Ph.D. Student Ph.D. Student | Deep learning for 3D medical image analysis

    • Organized and led Touchstone (NeurIPS, 2024), a large-scale benchmark for organ segmentation in CT volumes. It involved the collaboration of 14 international research teams and focused on out-of-distribution generalization

    • Studied demographic biases and generalization in 3D medical segmentation

    • Participated in the creation of AbdomenAtlas, the largest fully-annotated abdominal CT dataset

    • Used large vision-language models to improve per-voxel organ annotations

    • Used large vision-language models to generate radiology reports for CT scans

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University of Bologna - Bologna, BO, Italy

  • 11/2021-11/2025 (expected): Ph.D. Researcher | Deep Learning Trustworthiness, Explainability and Distributional Robustness

    • Introduced the optimization of Layer-wise Relevance Propagation to control deep classifiers and improve out-of-distribution generalization​

    • Introduced and investigated methods to improve the inter-institution generalizability of deep X-ray classifiers

    • Studied shortcut learning in computer vision

    • Elaborated novel solutions to the problem of spurious correlations in the backgrounds of natural and biomedical images

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Campinas State University (UNICAMP) - Campinas, SP, Brazil

  • 08/2019-08/2021: M.Sc. Researcher | Deep Learning for Image Recognition in Brain-Computer Interfaces and X-ray Classification​

    • Studied the utilization of deep neural networks for AI-assisted diagnosis in chest X-rays​

    • Used explanation techniques to interpret the decisions of deep X-ray classifiers and compare them to radiologists' reasoning

    • Identified spurious correlations in early Covid-19 chest X-ray datasets

    • Evaluated the importance of lung segmentation for the inter-institutional generalizability of deep X-ray classifiers

    • Introduced the combination of filter banks and deep neural networks to improve the speed, portability and accuracy of brain-computer interfaces

    • Introduced the utilization of the SpecAugment data augmentation technique for the classification of EEG spectrograms in brain-computer interfaces​​

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Campinas State University (UNICAMP) - Campinas, SP, Brazil

  • 08/2018-07/2019: Undergraduate Researcher | Applications of deep learning in SSVEP (steady state visually evoked potential) based brain-computer interfaces

    • Utilized deep learning to classify spectrograms of EEG signals in SSVEP-based brain-computer interfaces

    • Introduced the use of deep triplet neural networks in brain-computer interfaces

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Campinas State University (UNICAMP) - Campinas, SP, Brazil

  • 08/2017-07/2018: Undergraduate Researcher​Fundamentals of deep neural networks

    • Studied machine learning and deep learning, encompassing fundamental concepts in linear algebra, information theory and probability​

    • Studied the book Deep Learning, written by Ian Goodfellow, Yoshua Bengio, and Aaron Courville

    • Implemented deep neural networks in Python, employing PyTorch and Tensorflow

    • Studied regularization and overfitting in deep neural networks

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Scholarships
and Awards

  • 09/2021: Selected for a Ph.D. scholarship by Fulbright and CAPES 

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  • 07/2021-Present: Awarded a Ph.D. scholarship by IIT (Italian Institute of Technology)

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  • 08/2019-08/2021: Awarded a M.Sc. scholarship by CAPES

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  • 08/2018-07/2019: Awarded an undergraduate research project scholarship by UNICAMP

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  • 08/2017-07/2018: Awarded an undergraduate research project scholarship by CNPq

Teaching
Experience

  • ​08/2020-01/2021: Co-advisor (with Professor Romis Attux) in Mauricio Bernardini’s undergraduate thesis, on the subject of deep learning in medical applications. UNICAMP, SP, Brazil

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Language
Skills

  • English - Fluent (108/120 score on TOEFL IBT, ETS)

  • Portuguese - Fluent (native)

  • German - Fluent (B2 on Deutsches Sprachdiplom der Kultusministerkonferenz/DSD, Kultusministerkonferenz)

  • Spanish - Fluent (B2 on Diploma de Español como Lengua Extranjera/DELE, Instituto Cervantes)

  • Italian - Upper intermediate (currently studying)

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Programming and
Research Skills

  • Python, PyTorch, TensorFlow, and Keras

  • Neural networks and deep learning

  • Artificial Intelligence

  • Deep learning explainability

  • Computer vision

  • Natural language processing and vision-language models

  • Signal processing

  • Computational analysis of biomedical data

  • AI-assisted diagnosis

  • C

  • Matlab and Wolfram Mathematica

  • Assembly

  • Android programming (Kotlin)

  • Embedded systems

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Contact

Reviewer
Activity

  • Scientific Reports, Nature Portfolio

  • NeurIPS

  • ICLR

  • IEEE Transactions on Cybernetics, IEEE

  • Neural Networks, Elsevier

  • Biomedical Signal Processing and Control, BSPC, Elsevier

  • Medical & Biological Engineering & Computing, MBEC, Springer

  • Research on Biomedical Engineering, RBME, Springer

  • Simpósio Brasileiro de Telecomunicações e Processamento de Sinais, SBrT

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